An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster

<b>Data inputs</b> for the manuscript "An amplicon panel for high-throughput and low-cost genotyping of Pacific oyster <i>Crassostrea gigas</i>". Includes:<b>Data from Sutherland et al. 2020</b>, not originally uploaded and uploaded with permission from primary author:- populations_single_snp_HWE.raw (plink format, single-SNP per locus filtered output from Stacks populations module)- populations.snps.vcf (as above, but VCF format)<b>New data</b>, multilocus genotypes from the pilot study from the present analysis:- R_2022_08_04_S5XL.xls (initial run samples using Cgig_v.1.0 amplicon panel)- R_2022_10_07_S5XL.xls (second run using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot (tab-delim text file interp of populations; note: samples 1601-1608 are cultured samples from China, not wild samples, and this is dealt with in the analysis script)<b>New data</b>, multilocus genotypes from the Oregon State University (OSU) Molluscan Broodstock Program (MBP):- R_2023_07_26_12_44_23_user_GSS5PR-0268-78-Ampseq_Oyster_20230725.xls (OSU CHR8 samples using Cgig_v.1.0 amplicon panel)- my_data_ind-to-pop_annot_OSU_MBP.txt (population map, will need to rename as my_data_ind-to-pop_annot.txt to match requirement in scripts).

**数据输入文件** 针对手稿《太平洋牡蛎*Crassostrea gigas*高通量低成本基因分型扩增子面板》。包含：**源自Sutherland等人2020年研究的数据**，该数据最初未上传，经第一作者许可后上传：
- populations_single_snp_HWE.raw（PLINK格式，为Stacks种群模块过滤后的单基因座单SNP输出文件）
- populations.snps.vcf（格式同上，为VCF格式文件）
**新增数据**，本分析预实验获得的多位点基因型数据：
- R_2022_08_04_S5XL.xls（使用Cgig_v.1.0扩增子面板的首轮测序样本文件）
- R_2022_10_07_S5XL.xls（使用Cgig_v.1.0扩增子面板的第二轮测序样本文件）
- my_data_ind-to-pop_annot（制表符分隔的种群注释文本文件；注：样本1601-1608为中国养殖样本而非野生样本，相关处理已在分析脚本中完成）
**新增数据**，俄勒冈州立大学（Oregon State University, OSU）软体动物亲鱼计划（Molluscan Broodstock Program, MBP）提供的多位点基因型数据：
- R_2023_07_26_12_44_23_user_GSS5PR-0268-78-Ampseq_Oyster_20230725.xls（使用Cgig_v.1.0扩增子面板的OSU CHR8样本文件）
- my_data_ind-to-pop_annot_OSU_MBP.txt（种群映射文件，需重命名为my_data_ind-to-pop_annot.txt以符合脚本运行要求）。