Xiaoyan-54 WGS vs IWGSC RefSeq v1.0 Genome Assembly
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https://researchdata.edu.au/xiaoyan-54-wgs-genome-assembly/1603968
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资源简介：
WGS reads of Xiaoyan-54 (http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x) were aligned against the IWGSC Triticum aestivum Chinese Spring RefSeq v1.0 genome assembly using Minimap2. These BAM files (.bam) and index files (.bam.bai) are provided together with a summary of read alignment coverage bigWig files (.bam.bw). SNP variants were called from these BAM files to generate VCF files (.bam.vcf.gz) and index files (.bam.vcf.gz.tbi) and are provided together with a summary of SNP density (SNPs per 10 kbp) bigWig files (.bam.vcf.w10000_s10000.bw). VCF files contain the following filter values and corresponding meaning: PASS = high quality (Q>=30) homozygous; Het = high quality (Q>=30) heterozygous; LowQualHom = low quality (Q
小偃54（Xiaoyan-54，http://dx.doi.org/10.1111/j.1467-7652.2012.00717.x）的全基因组测序（Whole Genome Sequencing，WGS）读段经Minimap2工具比对至国际小麦基因组测序联盟（International Wheat Genome Sequencing Consortium，IWGSC）的普通小麦（Triticum aestivum）中国春参考基因组序列组装版本v1.0。
本数据集附带其BAM（Binary Alignment Map）格式文件（.bam）及对应的索引文件（.bam.bai），同时提供了测序读段比对覆盖度的bigWig格式汇总文件（.bam.bw）。
研究人员从上述BAM文件中检出单核苷酸多态性（Single Nucleotide Polymorphism，SNP）变异，生成VCF（Variant Call Format）格式文件（.bam.vcf.gz）及其索引文件（.bam.vcf.gz.tbi），并附带提供了SNP密度（每10千碱基对的SNP数目）的bigWig格式汇总文件（.bam.vcf.w10000_s10000.bw）。
VCF格式文件包含以下过滤标签及其对应含义：PASS代表高质量（Q值≥30）的纯合变异；Het代表高质量（Q值≥30）的杂合变异；LowQualHom代表低质量（Q
提供机构：
The University of Adelaide
