Additional file 6 of Mining massive genomic data of two Swiss Braunvieh cattle populations reveals six novel candidate variants that impair reproductive success

Additional file 6: Table S5. Comprehensive list of candidate causal variants. The data for BS (A) and OB (B) are provided, with information regarding haplotypes and the potential candidate causal variants based on the reference sequence ARS-UCD1.2 [36] and the NCBI Annotation Release 106 [54], including variant effect predictions (siftScore [63] and MutPred2 score [64]) and base conservation scores (phyloP and phastCons [61, 62]). Furthermore, the genotype distributions across whole-genome sequencing and genotyping data are included.

附加文件6：附表S5。候选致病变异综合列表。本数据集提供了BS（A）与OB（B）相关数据，涵盖基于参考序列ARS-UCD1.2[36]及NCBI注释版本106[54]的单倍型信息、潜在候选致病变异信息，包括变异效应预测值（siftScore[63]与MutPred2评分[64]）以及碱基保守性评分（phyloP与phastCons[61,62]）。此外，本列表还纳入全基因组测序与基因分型数据中的基因型分布情况。