Additional file 2 of A 44-kb deleted-type copy number variation is associated with decreasing complement component activity and calf mortality in Japanese Black cattle

Additional file 2: Table S1 Features of deleted-type CNVRs on autosomes in this study. Positions are based on the ARS-UCD1.2 assembly of the bovine genome. NA: 12 SNPs in BovineHD beadchip (UMD3.1 assembly) were not assigned by the ARS-UCD1.2 assembly. Table S2 Features of CNVR_221 and the surrounding SNPs. The SNP positions are based on the ARS-UCD1.2 assembly of the bovine genome. Table S3 Detailed features of genes in CNVR_221 and in close proximity to CNVR_221. The SNP positions are based on the ARS-UCD1.2 assembly of the bovine genome. Table S4 Detailed features of the domain of complement C1-related protein in CNVR_221 and in close proximity to CNVR_221. Domains were determined by the SMART protein sequence analysis tool. Table S5 Descriptive statistics of dead calves that suffered from diarrhea or pneumonia. Table S6 Primers and probes for CNVR_221 and BTF3. The SNP positions are based on the ARS-UCD1.2 assembly of the bovine genome. Table S7 Primers and probes for C1R subcomponent-like and C1R.