Additional file 1 of Succession and determinants of the early life nasopharyngeal microbiota in a South African birth cohort

Additional file 1: Section A. Extended methods (Figure S1). Section B. Extended results - sequencing controls and sample selection (Figures S2-S7). Section C. Extended results - Figures S8-S19. Section D. Extended references. Table S1. RDP classifier implementation for DADA2 and SILVA version: ASV table. Table S2. RDP classifier implementation for DADA2 and SILVA version: taxonomic classification. Table S3. Metadata file: NP specimens. Table S4. Metadata file: Participants. Table S5. Differential abundance testing.

补充材料1：A部分 扩展方法（图S1）。B部分 扩展结果——测序对照与样本筛选（图S2~S7）。C部分 扩展结果——图S8~S19。D部分 扩展参考文献。表S1：适配DADA2与SILVA版本的RDP分类器（Ribosomal Database Project Classifier）实现：扩增子序列变异（Amplicon Sequence Variant, ASV）表。表S2：适配DADA2与SILVA版本的RDP分类器（Ribosomal Database Project Classifier）实现：分类学注释表。表S3：元数据文件：NP标本。表S4：元数据文件：受试者信息。表S5：差异丰度检验。