Simulated phenotypes based on Timema GBS data

This compressed folder contains the simulated data sets where Timema cristinae GBS data were used as the starting point. It contains three gemma formatted genotype files (geno_sims.txt, geno2500_sims.txt, and geno592r_sims.txt) that contain the underlying genotypic data for the base simulations, those with 2500 individuals and those with replicated genotypes, respectively. The remaining files are named based on the simulations condition (simsN): 1, h2=0.3, L = 100; 2, h2=0.3, L=10; 3, h2=0.05, L=100; 4, h2=0.05, L=10; 5, h2=0.3, L=1000; and 6, h2=0.05, L=1000. Files with 'bin' in their name correspond to results with a binary measure of fitness (e.g., alive or dead). The general file types are as follows: pheno* = gemma formatted phenotype file with one column per simulated phenotypic data set, bv* = breeding values (expected phenotypic values) for each individual based on the genotypic data, effect* = phenotypic effect sizes for causal variants, functvar* = a list of the causal variants (by SNP number, and in the same order as in effect*).