Enformer's SNP effect predictions for the SNPs in the 6 phase 2 Blueprint hQTL datasets aggregated by sum. This is split by cell type (6 cell type predictions for 6 histone marks) and by QTL dataset (
Table S6. Predicted SNP effects for the top 50 Leaf DEGs. Genes correspond to those shown in Fig. 5. Details about columns are the same as described for Additional file 7: Table S5. (XLSX 19 kb)
Enformer's SNP effect predictions for the SNPs in the 6 phase 2 Blueprint hQTL datasets aggregated by sum. This is split by cell type (6 cell type predictions for 6 histone marks) and by QTL dataset (
Supplemental figures, tables and the CP-NAM VCF file. GBS were processed using Tassel version 5.2.52 (Bradbury et al.2007) following the GBS version 2 pipeline procedures (Glaubitz et al.2014). Tags w
