Prophage statistics
收藏DataCite Commons2025-11-05 更新2024-07-13 收录
下载链接:
https://open.flinders.edu.au/articles/dataset/phage_stats_20220620_tsv_gz/22268722
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资源简介:
The presence of prophages in bacterial genomes.
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This file has these columns:
0. GENOMEID - Genbank genome assembly accession
1. Genome Name - Definition of the genome in the genbank file
2. Contigs > 5kb - Number of contigs longer than 5 kb (only these were used to predict prophages)
3. Genome Contigs - Total number of contigs in the genome
4. Number of Coding Sequences - Total number of coding sequences in the genome
5. Too short - Number of phage predictions that were too short (less than 5 genes in the prediction)
6. Not enough phage hits - Number of phage predictions that did not have a single HMM match to VOGdb version 99
7. Kept - Number of high quality prophage predictions
8. Note - Outcome of the computation. You should read this column, especially if the sum of prophage predictions is zero
细菌基因组中的前噬菌体存在情况
本数据集文件包含以下列项:
0. 基因组ID:基因银行(GenBank)基因组组装登录号
1. 基因组名称:基因银行(GenBank)文件中对该基因组的定义说明
2. ≥5kb重叠群(contig)数量:仅此类重叠群被用于前噬菌体预测
3. 基因组总重叠群数:基因组中重叠群的总数量
4. 编码序列总数:基因组中编码序列的总数量
5. 过短预测数:噬菌体预测结果过短的数量(即预测结果包含的基因数少于5个)
6. 噬菌体匹配不足数:未匹配到VOGdb版本99任意隐马尔可夫模型(Hidden Markov Model, HMM)的噬菌体预测结果数量
7. 高质量预测保留数:通过筛选的高质量前噬菌体预测结果数量
8. 计算结果说明:本次计算的结果详情。若噬菌体预测总数为0,请务必阅读该列
提供机构:
Flinders University创建时间:
2023-03-14



