MOESM2 of Transcriptomic analysis of monocytes from HIV-positive men on antiretroviral therapy reveals effects of tobacco smoking on interferon and stress response systems associated with depressive symptoms

Additional file 2: Table S1. Fold-changes for all expressed probes: HIV+ TS+ vs. HIV- TS- limma model A. Table S2. Enriched gene ontology (GO) terms and associated genes: HIV+ TS+ vs. HIV- TS-. Table S3. Fold-changes for all expressed probes: HIV+ TS+ vs. HIV+ TS- limma model B. Table S4. Enriched gene ontology (GO) terms and associated genes: HIV+ TS+ vs. HIV+ TS-. Table S5. Fold-changes for all expressed probes: HIV+ TS- vs. HIV+ TS- limma model C. Table S6. Enriched gene ontology (GO) terms and associated genes: HIV+ TS- vs. HIV+ TS-. Table S7. Fold-changes for all expressed probes: HIV+ (HIV viral load ≤200) TS+ vs. HIV- TS- limma model for sensitivity analysis. Table S8. Enriched gene ontology (GO) terms and associated genes: HIV+ (HIV viral load ≤200) TS+ vs. HIV- TS-. Table S9. Fold-changes for all expressed probes: HIV+ (HIV viral load ≤200) TS+ vs. HIV+ (HIV viral load ≤200) TS- limma model for sensitivity analysis. Table S10. Enriched gene ontology (GO) terms and associated genes: HIV+ (HIV viral load ≤200) TS+ vs. HIV+ (HIV viral load ≤200) TS-.