Additional file 1 of Genome wide association study of agronomic and seed traits in a world collection of proso millet (Panicum miliaceum L.)

Additional file 1: Supplementary Table 1. Summary of accessions used in this study. The table reports the sample name, the type of material and geographic information on its origin. Accession ID and name report the international identifiers of the sample as reported in the USDA passport information. Supplementary Table 2. Overview of RAD sequencing data produced and alignment to the reference sequence. For each sample, the table reports the total amount of reads passing the quality threshold, the total amount of reads mapped on the genome, and the ratio of the two. Supplementary Table 3. GWAS Summary data. For each SNP, the table reports the chromosome and position on the reference genome. For each trait-SNP combination, the table reports the p-value of the association and estimated effect. Trait names are coded as in the main text.

附加文件1：补充表1。本研究所用种质材料登录信息汇总。该表列明了样本名称、材料类型及其来源地的地理信息。其中，种质登录号（Accession ID）及样本名称为美国农业部（USDA）种质护照信息中记载的样本国际识别标识。补充表2。限制性位点相关DNA（RAD）测序数据产出概况及与参考序列的比对结果统计。针对每个样本，该表记录了通过质量质控阈值的测序读段（reads）总数、比对至参考基因组的读段总数，以及二者的比值。补充表3。全基因组关联分析（GWAS）汇总数据。针对每个单核苷酸多态性（SNP），该表记录了其在参考基因组上的染色体编号及位置信息；针对每个性状-SNP组合，该表记录了关联分析得到的p值及估计效应值。性状名称的编码规则与正文一致。