Sequences Data from : "Large variation in the ratio of mitochondrial to nuclear mutation rate across animals : implications for genetic diversity and the use of mitochondrial DNA as a molecular marker"

This is the datasets used in the manuscript entitled : "Large variation in the ratio of mitochondrial to nuclear mutation rate across animals : implications for genetic diversity and the use of mitochondrial DNA as a molecular marker" submitted to Molecular Biology and Evolution<br><br>Authors : Remi Allio, Stefano Donega, Nicolas Galtier, Benoit Nabholz<br>Contact : Benoit Nabholz [e-mail]<br><br>The folder DataMolPhylEvol containts the 122 datasets analysed in the multilocus analysis. Within this folder, the folders "Data" have number that correspond to the number provided in Table S1. Each datasets include fasta files. Fasta files with names ending by _3rd.fst contain third codon positions and those ending by _full.fst contain all codon position alignments.<br><br>The folder phylogenomic contains the four datasets analysed in the phylogenomic analysis. Each dataset is composed of a nuclear and a mitochondrial folder in which nuclear and mitochondrial alignments are stored in fasta format. As for the DataMolPhylEvol, the fasta files with names ending by _3rd.fst contain third codon positions and those ending by _full.fst contain all codon position alignments.<br><br>

本数据集对应已投稿至《分子生物学与进化（Molecular Biology and Evolution）》的研究手稿，手稿标题为《动物界中线粒体与细胞核突变率比率的巨大差异：对遗传多样性的影响及以线粒体DNA作为分子标记的应用》。

作者团队为雷米·阿利奥（Remi Allio）、斯特凡诺·多内亚加（Stefano Donega）、尼古拉·加蒂耶（Nicolas Galtier）与伯努瓦·纳博洛茨（Benoit Nabholz）；联系方式：伯努瓦·纳博洛茨，邮箱：[e-mail]

DataMolPhylEvol文件夹收录了多位点分析中使用的122组数据集。该文件夹下以数字命名的子文件夹与表S1中的编号一一对应。每组数据集均包含FASTA（fasta）格式文件：文件名以_3rd.fst结尾的文件包含第三密码子位点序列，以_full.fst结尾的文件包含全部密码子位点的序列联配结果。

phylogenomic文件夹收录了系统基因组学分析中使用的4组数据集。每组数据集均由核基因组与线粒体基因组两个子文件夹构成，其中分别存储FASTA（fasta）格式的核基因组联配序列与线粒体基因组联配序列。与DataMolPhylEvol文件夹的规则一致，文件名以_3rd.fst结尾的文件包含第三密码子位点序列，以_full.fst结尾的文件包含全部密码子位点的序列联配结果。