jrc_mus-liver organelle predictions

A collection of ground truth data, raw predictions, and refined predictions performed on a mouse liver FIB-SEM dataset. This dataset captures a region within the mouse liver that includes several structures of metabolic significance. The data set contains profiles of many complete hepatocytes and their surrounding sinusoids and bile ductules. Some hepatocytes show two nuclei due to their enormous metabolic activity. Perforated endothelial cells and Kupffer cells form the lining of sinusoids. Inside each hepatocyte, many metabolic relevant organelles such as ER, mitochondria, lipid droplets and their structural relationship can be visualized in their entirety. Sample: Wild-type, 8 week old mouse, strain: C57BL/6 from Jackson Lab Dataset ID: jrc_mus-liver EM Data DOI: 10.25378/janelia.16913047 EM voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z) Segmentation voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z) Dataset URL: https://data.janelia.org/dyugw Visualization Website: https://openorganelle.janelia.org/datasets/jrc_mus-liver Segmented Organelles: ER, ER mem, Nucleus, PM, Mito, Mito mem, ECS Included in Dataset: predictions, segmentations, ground truth

本数据集包含针对小鼠肝脏聚焦离子束扫描电子显微镜（FIB-SEM）数据集生成的真实标注数据、原始预测结果与精修预测结果。该数据集采集了小鼠肝脏内一处包含多个代谢相关重要结构的区域，包含大量完整肝细胞及其周边血窦与胆管小管的结构轮廓。部分肝细胞因旺盛的代谢活性呈现双核表型。有孔内皮细胞与库普弗细胞（Kupffer cell）构成血窦的内壁。在每个肝细胞内部，诸多代谢相关细胞器如内质网（ER）、线粒体、脂滴及其结构关联均可被完整可视化。
实验样本：8周龄野生型C57BL/6品系小鼠，购自杰克逊实验室（Jackson Lab）
数据集编号：jrc_mus-liver
电子显微镜数据DOI：10.25378/janelia.16913047
电子显微镜体素尺寸（纳米）：8.0×8.0×8.0（X、Y、Z轴）
分割体素尺寸（纳米）：8.0×8.0×8.0（X、Y、Z轴）
数据集链接：https://data.janelia.org/dyugw
可视化网站：https://openorganelle.janelia.org/datasets/jrc_mus-liver
已分割细胞器：内质网（ER）、内质网膜（ER mem）、细胞核、细胞膜（PM）、线粒体（Mito）、线粒体膜（Mito mem）、细胞外空间（ECS）
数据集包含内容：预测结果、分割结果、真实标注数据