Nonsense single nucleotide variants (resulting in premature stop, or abrogation of start).

Loci based on genomic position and numbering in the H37Rv reference genome (NC_00962.3). All described alternate alleles at specified loci are in relation to the reference sequence at that position. Included loci are those with at least 5 isolates possessing the variant genotype. All were significantly associated with a MIRU cluster (pFDR <0.05).