Virus Pathogen Database for EsViritu

Databases for EsViritu: Read mapping pipeline for detection and measurement of virus pathogens from metagenomic data File descriptions v3.2.4/ virus_pathogen_database.all_metadata.tsv = sequence and taxonomy info for each sequence in database virus_pathogen_database.fna = fasta formatted nucleotide database of all virus genomes and segments virus_pathogen_database.mmi = minimap2 formatted index of database (for short read mapping) Relates to the tool in the following repository: EsViritu Updates since 3.2.2: Added over 500 genomes from family Arteriviridae (previously missing) Added 8 genomes from species Asfivirus haemorrhagiae Added one each influenza A H3N2 and H1N1 genome for 2025 season Masked some virus genomes to avoid mislabeling human/animal DNA Masked a few virus genomes with low-complexity repeat regions