Structural and epistatic regulatory variants cause hallmark white spotting in cattle

Genotype and phenotype data underlying analyses presented in the manuscript \"Structural and epistatic regulatory variants cause hallmark white spotting in cattle\". This package contains data required to recreate analyses presented in that paper, specifically genome wide association analyses of the 'splotchy' and 'speckly' coat pattern phenotypes. , , # Data from: Structural and epistatic regulatory variants cause hallmark white spotting in cattle Dataset DOI: [10.5061/dryad.fxpnvx15q](10.5061/dryad.fxpnvx15q) ## Description of the data and file structure Two filesets are included in this package, representing the genotypes and phenotypes used for 'Splotchy face' and 'Speckly coat' genome-wide association analyses. Both filesets consist of Plink binary format files (.bed, .bim, .fam) and a phenotype file, also directly loadable using Plink software. Splotchy face dataset: splotchy_phenos.txt splotchy_GWAS_geno_set.bed splotchy_GWAS_geno_set.bim splotchy_GWAS_geno_set.fam Speckly coat dataset: speckled_phenos.txt speckling_GWAS_geno_set.bed speckling_GWAS_geno_set.bim speckling_GWAS_geno_set.fam ### Files and variables #### File: speckling_GWAS_geno_set.bed **Description:**Â Plink format binary file for genome-wide genotypes for Speckly association analysis #### File: speckling_GWAS_geno_set.fam **Description:**Â Plink...,本数据集包含论文"Structural and Epistatic Regulatory Variants Cause Hallmark White Spotting in Cattle"中各项分析所依托的基因型（Genotype）与表型（Phenotype）数据。本数据包包含复现该论文所述分析所需的全部数据，具体用于复现针对“斑点面部”与“斑点被毛”两种被毛表型的全基因组关联分析（Genome-Wide Association Analysis, GWAS）。 数据来源：《Structural and Epistatic Regulatory Variants Cause Hallmark White Spotting in Cattle》 数据集DOI：[10.5061/dryad.fxpnvx15q](10.5061/dryad.fxpnvx15q) ## 数据与文件结构说明 本数据包包含两个数据集文件组，分别对应“斑点面部”与“斑点被毛”的全基因组关联分析所用的基因型与表型数据。两组文件集均由Plink软件（Plink）的二进制格式文件（.bed、.bim、.fam）以及一张表型文件组成，可直接通过Plink软件加载。 ### 斑点面部数据集 - splotchy_phenos.txt - splotchy_GWAS_geno_set.bed - splotchy_GWAS_geno_set.bim - splotchy_GWAS_geno_set.fam ### 斑点被毛数据集 - speckled_phenos.txt - speckling_GWAS_geno_set.bed - speckling_GWAS_geno_set.bim - speckling_GWAS_geno_set.fam ### 文件与变量说明 #### 文件：speckling_GWAS_geno_set.bed **描述**：用于斑点被毛关联分析的全基因组基因型Plink格式二进制文件 #### 文件：speckling_GWAS_geno_set.fam **描述**：Plink格式……