MOESM6 of Using whole-genome SNP data to reconstruct a large multi-generation pedigree in apple germplasm

Additional file 6: Table S5. Non-Oriented Parent-Offspring duos inferred with less than 600 Mendelian Errors (ME), indicating the preferred name of the two individuals of the pair (Preferred Name Ind1, Preferred Name Ind2) and their MUNQ (MUNQ Ind1, MUNQ Ind2, the number of ME (# ME), MUNQ of supposed offspring (Supposed Offspring) and supposed parent (Supposed parent) in the pair when available with indication of the source of the supposed orientation (oriented using), presupposed parents of both individuals (Ind1_Parent1 from Literature, Ind1_Parent 2 from Literature, Ind2_Parent1 from Literature, Ind2_Parent 2 from Literature) and source of these documentation (Source_parents_ind1, Source_parents_ind2), documented dates of ind1 and ind2 as indicated in Additional file 1: Table S1, and indication of possibility of orientation according to date (Date consistency). The duos which were oriented based on documented parentage (ped-lit in column “oriented using”) are listed in the first 44 lines, and are sorted alphabetically according to the preferred name of the supposed offspring. The duos which were oriented based on documented dates of the two individuals are listed in the next 161 lines and are sorted from the oldest to the most recent supposed parent; next are listed the 43 duos which were oriented because one individual of the duos was supposed a child in a duo oriented according to previously documented parentage or dates; these are sorted from the oldest to the most recent supposed parent; next are listed two duos which were oriented in a second round. Next are listed 51 duos for which a date was listed for one individual only: this individual was then attributed to be Ind2 and all these duos are sorted from the oldest to the most recent Ind2. Next are listed seven duos for which a date was available for both individuals but was too imprecise or too old to enable orientation. The remaining 22 duos for which neither dates nor parentage documentation were found, are listed at the end; individuals that appeared most frequently in these duos were attributed to be Ind2 and all these duos are sorted alphabetically according to the preferred name of Ind2.附加文件6：表S5。本表收录经推断孟德尔错误（Mendelian Errors, ME）数量少于600的非定向亲子对（Parent-Offspring duos），内容涵盖成对个体的推荐名称（推荐名称Ind1、推荐名称Ind2）及其MUNQ值、孟德尔错误数量（# ME），以及成对个体中推测子代（Supposed Offspring）与推测亲本（Supposed parent）的MUNQ值；若存在相关信息，还将标注推测定向的来源（"oriented using"）、两个个体的预设亲本（分别为来自文献的Ind1_Parent1、Ind1_Parent2、Ind2_Parent1、Ind2_Parent2）、这些文献记录的来源（Source_parents_ind1、Source_parents_ind2）、附加文件1表S1中记载的Ind1与Ind2的日期，以及基于日期判断的定向可能性（Date consistency）。基于已记录亲子关系定向的对（列"oriented using"中取值为ped-lit）位于前44行，按推测子代的推荐名称字母顺序排序；基于两个体已记录日期定向的对共161行，紧随上述内容之后，按推测亲本的时间从早到晚排序；随后43对为其中一个个体曾在先前基于文献亲子关系或日期定向的对中作为子代的情况，同样按推测亲本的时间从早到晚排序；之后为2对通过第二轮定向得到的亲子对；接下来51对仅记录了单个个体的日期，此类对中该个体被指定为Ind2，且按Ind2的时间从早到晚排序；随后7对的两个个体均有日期记录，但日期过于模糊或过于久远，无法完成定向；最后22对既无日期记录也无亲子关系文献佐证，将在此类对中出现频次最高的个体设为Ind2，并按Ind2的推荐名称字母顺序排序。