Supplement dataset and code for "Functional Unknomics of SAR11 clade using bioinformatics approaches"

data.tar.gz (65.09 MB)Contains all datasets used to generate figures in the manuscript, including annotation tables, structural similarity search results, genomic-context outputs, and intermediate processed files. 260613_unknome_R.ipynb.ipynb (6.95 MB)R notebook used to generate all visualizations included in this study. All necessary raw datasets are provided in data.tar.gz. plot.tar.gz (1.58 MB)All plot files generated by 260613_unknome_R.ipynb.ipynb. aai_cleaned_comp50_contam10.tsv (580.95 KB)AAI calculation results for SAR11 genomes. SonicParanoid2_ortholog_groups.tsv (7.94 MB)Orthologous group assignments generated using SonicParanoid2. TMHMM2_result.tsv (14.68 MB)Predicted transmembrane regions for SAR11 proteins (TMHMM 2.0). all_SAR11_defense_finder_genes.tsv (21.27 KB)all_SAR11_defense_finder_hmmer.tsv (525.50 KB)all_SAR11_defense_finder_systems.tsv (6.90 KB)DefenseFinder outputs, including predicted defense genes, HMMER matches, and system-level classifications.