Comparison of FACS algorithms with CoMeta.

Comparison of the best classification results obtained using four methods (bold values indicate the best score for each column): FACS-P: the FACS 2.1 program in Perl [49]. When read is classified to some Gi-th reference sequence, it does not be compared with any further reference sequence; FACS-C: the FACS program in C, which was downloaded from https://github.com/SciLifeLab/facs. The reads are classified to each reference sequence to which similarity is highest than MC; pre-CoMeta: the only comparison step of CoMeta algorithm (without assignment). This is a similar strategy as implemented in FACS-C. CoMeta: the full proposed algorithm, the reads are classified to the reference sequence according to the highest score. Comparison of FACS algorithms with CoMeta.