Additional file 1: Tables S1, S2 and S3. of COGcollator: a web server for analysis of distant relationships between homologous protein families

Representative list of 124 genomes sampled from the 711 genomes of the current COG database release [2]. Table S2. Representative list of 27 eukaryotic genomes sampled manually. Table S3. Results of the similarity assessment for the homologs of catalytic β-subunit of the bacterial FOF1-type ATP synthase by applying the HHpred algorithm [19]. The top hits for the α- and β-subunits of the F-type ATP synthase of E.coli and the B- and A- subunits of the A-type ATP synthase of Methanosarcina mazei (cf with Table 1) are colored red. (XLSX 29 kb)

从当前COG数据库发布版[2]的711个基因组中采样得到的124个代表性基因组列表，详见表S2。手动采样得到的27个真核基因组代表性列表，详见表S3。通过HHpred算法[19]对细菌FOF1型ATP合酶催化性β亚基的同源序列开展相似性评估的结果：其中大肠杆菌F型ATP合酶α、β亚基以及马氏甲烷八叠球菌（Methanosarcina mazei）A型ATP合酶B、A亚基的最佳匹配结果（可与表1对照）已标注为红色。（XLSX 29 kb）