Nederlof I et al. Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer.

Supplementary data tables from Nederlof I et al. Comprehensive evaluation of methods to assess overall and cell-specific immune infiltrates in breast cancer. - The microscopic, methylomic and transcriptomic based immune infiltration scores and fractions. Reported on H&E (sTIL, itTIL), Tissue Micro Array (TMA; CD3, CD4, CD8, CD20, CD68, FOXP3), digital TMA (CD3, CD4, CD8, CD20, CD68), Whole Slides (WS; CD3, CD4, CD8, CD20, CD68, FOXP3), and digital WS (CD3). - The sort of data available for each patient. Table lists transcriptomic data (RNAseq), methylomic data, Tissue Micro Array (TMA), Whole Slides (WS), Haematoxylin & Eosin slides (H&E), and whole genome sequencing (WGS). - Reports on the statistical differences of the distribution of clinical and pathological characteristics for each data type available versus the samples that do not have this data type available. Data types tested are transcriptomic, methylomic, Tissue Micro Array (TMA) and Whole Slides (WS)

本数据集为Nederlof I等人发表于《乳腺癌整体及细胞特异性免疫浸润评估方法的全面评估》的补充数据表。其包含基于显微成像、甲基组学（methylomic）与转录组学（transcriptomic）的免疫浸润评分及占比数据，涵盖苏木精-伊红染色切片（Haematoxylin & Eosin，缩写H&E，含sTIL、itTIL指标）、组织微阵列（Tissue Micro Array，缩写TMA，检测CD3、CD4、CD8、CD20、CD68、FOXP3）、数字化组织微阵列（检测CD3、CD4、CD8、CD20、CD68）、全视野切片（Whole Slides，缩写WS，检测CD3、CD4、CD8、CD20、CD68、FOXP3）以及数字化全视野切片（检测CD3）。该表列明了每位患者可获取的数据类型，涵盖转录组学数据（RNA测序，RNAseq）、甲基组学数据、组织微阵列（TMA）数据、全视野切片（WS）数据、苏木精-伊红染色切片（H&E）数据以及全基因组测序（WGS）数据。本数据集还报告了各可获取数据类型与无该数据类型的样本之间，临床及病理特征分布的统计学差异。本次检验的数据类型包括转录组学数据、甲基组学数据、组织微阵列（TMA）以及全视野切片（WS）