Additional file 13: of Global analysis of primary mesenchyme cell cis-regulatory modules by chromatin accessibility profiling

Table S8. Peaks cloned into EpGFPII and injected into S. purpuratus eggs. Column 1: ATAC Peak Name: Peak number obtained from ATAC-seq RPS peak names. These are the peaks cloned into the EpGFPII plasmid. Column 2: Scaffold: S. purpuratus genome version 3.1 scaffold containing the peak. Column 3: Start: Start coordinate of the peak. Column 4: End: End coordinate of the peak. Column 5: Name of closest gene. Column 6: PMC DE gene?: "Yes" if the closest gene is a PMC DE gene. Column 7: DNase-seq Diff Peak?: "Yes" if this peak is also differential in the DNase-seq dataset. Column 8: GFP Expression?: "Yes, PMC-specific" if the construct drives PMC-specific GFP expression in 48-hour embryos. Column 9: Region Cloned: The coordinates of the region (containing the peak plus flanking regions) cloned into the EpGFPII plasmid. Column 10: Orientation wrt Closest Gene: "Normal" orientation indicates that the peak was cloned in its normal orientation relative to the coding strand of the closest gene. "Reversed" means that the orientation was reversed relative to the coding strand of the closest gene. Column 11: Notes: Additional information, if applicable, regarding additional peaks cloned into the same construct. (XLSX 52 kb)