Repression of translation by uORFs is not widespread but highly gene-specific

P { margin-bottom: 0.08in } Scer_CDS.gtf : annotation file coding sequences <i>S. cerevisiae</i> Scer_5UTR.gtf: annotation file 5'UTR sequences <i>S. cerevisiae</i> Spom_CDS.gtf: annotation file coding sequences <i>S. pombe</i> Spom_5UTR.gtf: annotation file 5'UTR sequences <i>S. pombe</i> Scer_uORFs.fa: upstream ORF (uORF) sequences <i>S. cerevisiae</i> Spom_uORF.fa: upstresm ORF (uORF) sequences <i>S. pombe</i> Scer.aa-_5UTR_counts.txt: table of counts 5'UTR <i>Scer.aa- </i> Scer.aa-_CDS_counts.txt: table of counts coding sequences <i>Scer.aa-</i> Scer.aa_uORF_counts.txt: table of counts uORFs <i>Scer.aa- </i> Scer.Oxi_5UTR_counts.txt: table of counts 5'UTR <i>Scer.Oxi</i> Scer.Oxi_CDS_counts.txt: table of counts CDS <i>Scer.Oxi</i> Scer.Oxi_uORF_counts.txt: table of counts uORFs <i>Scer.Oxi</i> Spom_N-_5UTR_counts.txt: table of counts 5'UTR <i>Spom.N-</i> Spom_N-_CDS_counts.txt: table of counts CDS <i>Spom.N-</i> Spom_N-_uORF_counts.txt: table of counts uORFs <i>Spom.N-</i> translated_uORF_Spom.N-.txt: modified RibORF output Spom.N- SUB_Scer.aa-_CDS_counts.xls: subsampled table of counts CDS <i>Scer.aa-</i> SUB_Scer.Oxi_CDS_counts.xls: subsampled table of counts CDS <i>Scer.Oxi</i> SUB_Spom.N-_CDS_counts.xls: subsampled table of counts CDS <i>Spom.N-</i> Scer.aa-_DE_genes.xlsx: differentially expressed genes based on CDS counts <i>Scer.aa-</i> Scer.Oxi_DE_genes.xlsx: differentially expressed genes based on CDS counts <i>Scer.Oxi</i> Spom.N-_DE_genes.xlsx: differentially expressed genes based on CDS counts <i>Spom.N-</i> Scer.aa-_TE_genes.xlsx: genes with significantly different TE in stress vs normal <i>Scer.aa-</i> Scer.Oxi_TE_genes.xlsx: genes with significantly different TE in stress vs normal <i>Scer.Oxi</i> Spom.N-_TE_genes.xlsx: genes with significantly different TE in stress vs normal <i>Spom.N-</i>S_5UTR.list: list of S.cerevisiae genes with 5'UTR sequences available<i><br></i>