Parsed Open Citations and PubMed Data

This dataset contains five files. (i) open_citations_jan2024_pub_ids.csv.gz, open_citations_jan2024_iid_el.csv.gz, open_citations_jan2024_el.csv.gz, and open_citation_jan2024_pubs.csv.gz represent a conversion of Open Citations to an edge list using integer ids assigned by us. The integer ids can be mapped to omids, pmids, and dois using the open_citation_jan2024_pubs.csv and open_citations_jan2024_pub_ids.scv files. The network consists of 121,052,490 nodes and 1,962,840,983 edges. Code for generating these data can be found https://github.com/chackoge/ERNIE_Plus/tree/master/OpenCitations.

(ii) The fifth file, baseline2024.csv.gz, provides information about the metadata of PubMed papers. A 2024 version of PubMed was downloaded using Entrez and parsed into a table restricted to records that contain a pmid, a doi, and has a title and an abstract. A value of 1 in columns indicates that the information exists in metadata and a zero indicates otherwise. Code for generating this data: https://github.com/illinois-or-research-analytics/pubmed_etl. If you use these data or code in your work, please cite https://doi.org/10.13012/B2IDB-5216575_V1.

本数据集共包含5个文件。
(i) "open_citations_jan2024_pub_ids.csv.gz"、"open_citations_jan2024_iid_el.csv.gz"、"open_citations_jan2024_el.csv.gz"与"open_citation_jan2024_pubs.csv.gz"四个文件，是将开放引用（Open Citations）数据集转换为采用我们自行分配的整数标识符构建的边列表（edge list）格式的数据。上述整数标识符可通过"open_citation_jan2024_pubs.csv"与"open_citations_jan2024_pub_ids.scv"文件映射至omid、pmid及doi。该引文网络共计包含121,052,490个节点与1,962,840,983条边。生成此类数据的代码可访问：https://github.com/chackoge/ERNIE_Plus/tree/master/OpenCitations。

(ii) 第五个文件"baseline2024.csv.gz"提供PubMed论文的元数据信息。本次通过Entrez检索工具下载2024版PubMed数据库，并将其解析为仅保留同时包含pmid、doi，且具备标题与摘要的记录的数据表。数据表列值为1时，表示对应元数据字段已存在；值为0则表示该字段缺失。生成该数据集的代码仓库地址为：https://github.com/illinois-or-research-analytics/pubmed_etl。若您在研究工作中使用本数据集或相关代码，请引用以下文献：https://doi.org/10.13012/B2IDB-5216575_V1。