Additional file 1 of Genome-environment association analysis reveals climate-driven adaptation of chickens

Additional file 1: Table S1. Summary of samples included in this study. Table S2. Summary of climatic variables included in this study. Table S3. Summary of genome sequencing and mapping statistic. Table S4. Details of SNPs' repartition across the autosomal chromosomes. Table S5. Within-population genetic diversity. Table S6. 1464 candidate SNPs associated with climatic variables as identified by the LFMM approach. Table S7. 5552 candidate SNPs associated with climatic variables as identified by the Samβada. Table S8. 12,584 candidate SNPs associated with climatic variables as identified by the RDA. Table S9. 184 genes identified by the LFMM, individual-based spatial analysis, and RDA. Table S10. The overlap of candidante genes with reported QTLs related to the adaptation of chickens. Table S11. 82 genes associated with temperature adaptation identified by the LFMM, individual-based spatial analysis, and RDA. Table S12. 62 genes associated with precipitation adaptation identified by the LFMM, individual-based spatial analysis, and RDA.