Additional file 2 of Multi-omics insights into microbiome-rumen epithelium interaction mechanisms underlying subacute rumen acidosis tolerance in dairy goats

Additional file 2: Table S1 the contribution analysis of functions and microbiota. Table S2 The KEGG pathways enriched by differential genes from HGW-SARA vs HGW-Health goats and HGW-SARA vs HGC-Health goats. Table S3 The number of cells of each type in rumen epithelium in each group of dairy goats. Table S4 The quantity and ratio of basal spinous and granule cells. Table S5 The differential compounds in the rumen between HGW-SARA and LGW-CON goats. Table S6 The correlation between microbiome upregulated in HGW-Health and metabolites related with metabolism. TableS7 The differential compounds participated in Tryptophan metabolism in the rumen of HGW-SARA vs H + S and HGW-SARA vs S + H goats. Table S8 Ingredients and nutrient composition of the low and high-concentrate diet on a dry matter (DM) basis. Table S9 The ingredient list of Reinforced Clostridium Medium (RCM). Table S10 The primers used for relative real-time PCR.