Haplotype structure, haplotype frequencies, significant p values and odds ratio between patients versus healthy controls of 11 significantly associated SNPs.

Column: Hap-Score shows haplotype score statistic; Base, part of the baseline; Frequencies and disease association of haplotype of SNP alleles was tested using haplo.cc extended application of Haplo.stasts software (v1.4.4) which combines the results of haplo.score, haplo.group and haplo.glm. Haplotype frequency was computed by maximum likelihood estimates of haplotype probabilities with progressive insertion algorithm and haplo.cc computed score statistic to test association between haplotype and traits with adjustment for non-genetic covariates (sex).pa Indicates the haplotype comparison statistics for patients vs controls.