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Additional file 4 of Dynamic RNA profiles in the small intestinal epithelia of cats after Toxoplasma gondii infection

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DataCite Commons2023-07-26 更新2024-08-18 收录
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Additional file 4. Expressional data of all the RNAs and their feature information obtained in this study. Sheet 1: The detailed information of the spliced transcripts and the partial transcripts of the known lncRNAs with overlaps in the database can be divided into intergenic lncRNAs (lincRNAs for short), intronic lncRNAs, anti-sense lncRNAs, and sense lncRNAs according to their positional relationship with the coding sequences, bidirectional lncRNA and other types. Sheet 2: Details of the novel_lncRNA screened this study. Sheet 3: Detailed property information of the mRNA of their species. Sheet 4: Annotation files of all identified circRNAs (chr: chromosome number, start: start site of full-length circRNA, end: termination site of full-length circRNA, strand: positive and negative strands, full_length: full-length circRNA, spliced_length: length of circRNA after shearing). Sheet 5: miRNA differential expression analysis results (sRNA: miRNA mature body id).

补充文件4:本研究获取的所有RNA的表达数据及其特征信息。 表1:数据库中已注释的存在序列重叠的已知长链非编码RNA(long non-coding RNAs,简称lncRNAs)的剪接转录本与部分转录本的详细信息,根据其与编码序列的位置关系,可分为基因间长链非编码RNA(intergenic lncRNAs,简称lincRNAs)、内含子区长链非编码RNA(intronic lncRNAs)、反义长链非编码RNA(anti-sense lncRNAs)、有义长链非编码RNA(sense lncRNAs)、双向长链非编码RNA(bidirectional lncRNAs)及其他类型。 表2:本研究筛选得到的新型长链非编码RNA的详细信息。 表3:对应物种信使RNA(messenger RNA,简称mRNA)的详细属性信息。 表4:所有已鉴定环状RNA(circular RNA,简称circRNAs)的注释文件,各字段说明如下:chr为染色体编号,start为环状RNA全长起始位点,end为环状RNA全长终止位点,strand为正负链,full_length为环状RNA全长长度,spliced_length为环状RNA剪接后长度。 表5:微小RNA(microRNA,简称miRNA)差异表达分析结果,其中sRNA代表miRNA成熟体编号。

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figshare
创建时间:
2023-07-26
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