RNA-seq Dataset from Crowley et. al. 2015

This dataset was uploaded to this repository by Joshua P. Zitovsky and Michael I. Love with permission from the original authors, due to the fact that the original dataset is not currently hosted in a stable repository. If this dataset is used in original research leading to published work, please cite the Crowley et. al. 2015 paper.

This repository contains an RNA-seq dataset based on the allelic expression study by Crowley et. al. (2015). The study took mice from three divergent inbred strains (CAST/EiJ, PWK/PhJ and WSB/EiJ) and performed a diallel cross. The data set contains allele-specific expression (ASE) counts for 72 mice and 23,297 genes in the resulting cross, with 12 mice of each possible parent combination, and an equal number of males and females within each parent combination. Sequencing was performed with the Illumina HiSeq 2000 platform to generate 100-bp paired-end reads and following the TruSeq RNA Sample Preparation v2 protocol.