Refined, automatic nuclei segmentations in near-isotropic, reconstructed volume electron microscopy (FIB-SEM) of mouse kidney (jrc_mus-kidney-2)

Segmentation description: Nuclei segmentations in jrc_mus-kidney-2 using Cellpose 3.0.9 with cursory manual corrections.
Software: Cellpose 3.0.9
Software DOI: https://doi.org/10.1038/s41592-022-01663-4
Prediction Duration (seconds): 814.94
GPU: NVIDIA TITAN RTX
RAM: 251.0 GiB
Label voxel size (nm): 128 x 128 x 128 (x, y, z)
Reconstructed data dimensions (µm): 102.992 x 101.464 x 110.536 (X,Y,Z)
Classes annotated: Nucleus
Source dataset (EM) ID: jrc_mus-kidney-2
Source dataset (EM) voxel size (nm): 8.0 x 8.0 x 8.0 (X, Y, Z)
Source dataset (EM) data dimensions (µm): 102.992 x 101.464 x 110.536 (X,Y,Z)
Source dataset (EM) DOI: https://doi.org/10.25378/janelia.23411009
Dataset URL: s3://janelia-cosem-datasets/jrc_mus-kidney-2/jrc_mus-kidney-2.zarr/recon-1/labels/inference/segmentations/nuc/
Visualization website: https://openorganelle.janelia.org/datasets/jrc_mus-kidney-2