Phased VCF outputs for "HiPhase: Jointly phasing small, structural, and tandem repeat variants from HiFi sequencing"

NIAID Data Ecosystem2026-05-01 收录

下载链接：

https://zenodo.org/record/10233349

下载链接

链接失效反馈

官方服务：

资源简介：

The collection of raw and processed VCF files for the paper titled: "HiPhase: Jointly phasing small, structural, and tandem repeat variants from HiFi sequencing". Raw VCF files from DeepVariant, pbsv, and TRGT are included in the unphased subfolder. Outputs from WhatsHap and HiPhase are in their own subfolders. Three replicates of HG002 are included in all subfolders. Layout is as follows: hiphase_vcfs ├── all_vcfs.md5 ├── hiphase │ ├── HG002-rep1.GRCh38.deepvariant.hiphase.vcf.gz │ ├── HG002-rep1.GRCh38.deepvariant.hiphase.vcf.gz.tbi │ ├── HG002-rep1.GRCh38.pbsv.hiphase.vcf.gz │ ├── HG002-rep1.GRCh38.pbsv.hiphase.vcf.gz.tbi │ ├── HG002-rep1.GRCh38.trgt.hiphase.vcf.gz │ ├── HG002-rep1.GRCh38.trgt.hiphase.vcf.gz.tbi │ ├── HG002-rep2.GRCh38.deepvariant.hiphase.vcf.gz │ ├── HG002-rep2.GRCh38.deepvariant.hiphase.vcf.gz.tbi │ ├── HG002-rep2.GRCh38.pbsv.hiphase.vcf.gz │ ├── HG002-rep2.GRCh38.pbsv.hiphase.vcf.gz.tbi │ ├── HG002-rep2.GRCh38.trgt.hiphase.vcf.gz │ ├── HG002-rep2.GRCh38.trgt.hiphase.vcf.gz.tbi │ ├── HG002-rep3.GRCh38.deepvariant.hiphase.vcf.gz │ ├── HG002-rep3.GRCh38.deepvariant.hiphase.vcf.gz.tbi │ ├── HG002-rep3.GRCh38.pbsv.hiphase.vcf.gz │ ├── HG002-rep3.GRCh38.pbsv.hiphase.vcf.gz.tbi │ ├── HG002-rep3.GRCh38.trgt.hiphase.vcf.gz │ └── HG002-rep3.GRCh38.trgt.hiphase.vcf.gz.tbi ├── unphased │ ├── HG002-rep1.GRCh38.deepvariant.vcf.gz │ ├── HG002-rep1.GRCh38.deepvariant.vcf.gz.tbi │ ├── HG002-rep1.GRCh38.pbsv.vcf.gz │ ├── HG002-rep1.GRCh38.pbsv.vcf.gz.tbi │ ├── HG002-rep1.GRCh38.trgt.vcf.gz │ ├── HG002-rep1.GRCh38.trgt.vcf.gz.tbi │ ├── HG002-rep2.GRCh38.deepvariant.vcf.gz │ ├── HG002-rep2.GRCh38.deepvariant.vcf.gz.tbi │ ├── HG002-rep2.GRCh38.pbsv.vcf.gz │ ├── HG002-rep2.GRCh38.pbsv.vcf.gz.tbi │ ├── HG002-rep2.GRCh38.trgt.vcf.gz │ ├── HG002-rep2.GRCh38.trgt.vcf.gz.tbi │ ├── HG002-rep3.GRCh38.deepvariant.vcf.gz │ ├── HG002-rep3.GRCh38.deepvariant.vcf.gz.tbi │ ├── HG002-rep3.GRCh38.pbsv.vcf.gz │ ├── HG002-rep3.GRCh38.pbsv.vcf.gz.tbi │ ├── HG002-rep3.GRCh38.trgt.vcf.gz │ └── HG002-rep3.GRCh38.trgt.vcf.gz.tbi └── whatshap ├── HG002-rep1.GRCh38.deepvariant.whatshap.vcf.gz ├── HG002-rep1.GRCh38.deepvariant.whatshap.vcf.gz.tbi ├── HG002-rep2.GRCh38.deepvariant.whatshap.vcf.gz ├── HG002-rep2.GRCh38.deepvariant.whatshap.vcf.gz.tbi ├── HG002-rep3.GRCh38.deepvariant.whatshap.vcf.gz └── HG002-rep3.GRCh38.deepvariant.whatshap.vcf.gz.tbi 3 directories, 43 files

创建时间：

2023-11-30