Data obtained from reanalysis of RNA sequencing data from drought-stressed roots and salinity-stressed leaves of pearl millet

Reads from previous RNA sequencing with drought-stressed roots and salinity-stressed leaves of pearl millet (NCBI SRA accession numbers SRP125789 and SRP128956, respectively) were analyzed as given below. The data derived from this analysis are available here.
The reads were mapped to the reference pearl millet genome BWA (MEM). Reads mapped for each gene were counted by featureCounts. Differentially expressed genes (DEGs) were detected by either DESeq2 or a custom script. Either 500-b or 1000-b promoter sequences of pearl millet were prepared by processing their 5000-b promoter sequences downloaded from TGIF-DB (https://webpark2116.sakura.ne.jp/rlgpr/). Motifs enriched in these 500-b and 1000-b promoter sequences of the above DEGs were detected by Homer. The custom script used can be provided upon request.