Figure4

Figure4: ATAC-5c versus RNA-5c. ATACseq regions are associated with genes; counts associated with each gene indicate the number of reads detected by ATACseq within the genomic coordinates of each gene. A) Cells were represented on the basis of the number of genes supported by at least 3 UMI and plotted with respect to the total number of UMI in each cell. B) Seurat clustering (resolution: 0.6) of the cells’ ATACseq counts. C) SCA pseudo-bulk Pearson similarity among ATACseq clusters (a1-6) and scRNAseq (X1-5, Figure 2A). Square boxes indicate the highest similarity among clusters: a1/X1, a4/X3 and a6/X5.

Figure 4A
somewhere_in_your_computer/fig4/atac_seq3/2_Atac_Genes/umiPlotGSM4224433.pdf

Figure4B

somewhere_in_your_computer/fig4/atac_seq3/3_Atac_Genes_filtered/Clustering_&_PseudoBulk/annotated_matrix/6/annotated_matrix_Stability_Plot.pdf

Figure4C
somewhere_in_your_computer/fig4/atac_seq3/3_Atac_Genes_filtered/Clustering_&_PseudoBulk/pseudoBulk/permutation/log2_reformatedCPM.psblkAE-rna5c_mean-centered.png