Gene expression counts from induced Pluripotent Stem Cells

File description:

Gene-level counts using the gtf file from the release 34 of GENCODE https://www.gencodegenes.org/human/release_34

Split counts spanning from one exon to another using an annotation-free algorithm, therefore capturing new splice sites

Non-split counts covering exon-intron boundaries

Sample annotation describing each sample from the dataset

Description file with global information from the dataset

Use: The count matrices are intended to help researchers that are interested in using RNA-Seq data with the purpose of diagnostics. Researchers can merge their own dataset with the downloaded ones, provided the tissue, genome build, strand, and paired-end specifications match. Afterwards, the workflow DROP can be used to compute expression and splicing outliers (https://github.com/gagneurlab/drop).

Maintainer: Vicente A. Yépez, [e-mail]

URL: https://github.com/gagneurlab/drop/

Title: induced Pluripotent Stem Cells
Number of samples: 330
Tissue: iPSCs
Organism: Homo sapiens
Genome assembly: hg19
Gene annotation: gencode34
Disease: None
Strand specific: True
Paired end: True
Dataset contact: Marc Bonder, marcj89 at gmail.com

Citation: Cite both the resource using Zenodo's citation and the publication under References