Mindboggle-101 atlases (anatomical labels from a population of brains)

The Mindboggle-101 surface and volume brain atlases were generated as part of the Mindboggle project (<a href="http://mindboggle.info" target="_blank">http://mindboggle.info</a>) and are licensed under a <a href="http://creativecommons.org/licenses/by/4.0" target="_blank">Creative Commons License</a>. The anatomical labels are combined across individually labeled brain volumes or surfaces from Mindboggle-101 according to the Desikan-Killiany-Tourville (DKT) labeling protocol:
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"101 labeled brain images and a consistent human cortical labeling protocol"
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Arno Klein, Jason Tourville. Frontiers in Brain Imaging Methods. 6:171.
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DOI: <a href="http://dx.doi.org/10.3389/fnins.2012.00171" target="_blank">10.3389/fnins.2012.00171</a>
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<b>Volume atlas construction</b>
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The joint fusion algorithm (Hongzhi Wang, 2013; distributed with ANTs) was used to construct probabilistic labels of the 20 OASIS-TRT brains, including a single volume of probabilities corresponding to the winning labels. Joint fusion was performed on the 20 brains after antsRegistration warped them to the OASIS-30 Atropos template. Results are also given after affine transformation to the OASIS-30 Atropos template in MNI152 space, and after resampling to 2mm^3 resolution.
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<b>Code and documentation</b>:
<ul>
<li>CHANGELOG.txt: log of changes</li>
<li>make_jointfusion_atlas.txt: code to make a joint fusion atlas</li>
<li>resample2mm.txt: code to resample a volume to 2mm^3 resolution</li>
<li>make_freesurfer_classifier_atlas.txt: software to make a FreeSurfer classifier atlas</li>
</ul>

<b>Joint fusion volume atlases</b> (2013)
<ul>
<li>OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_OASIS-30_v2.nii.gz</li>
<li>OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_MNI152_v2.nii.gz</li>
<li>OASIS-TRT-20_jointfusion_DKT31_CMA_labels_in_MNI152_2mm_v2.nii.gz
</li>
</ul>

<b>Joint fusion label probabilities</b> (2013)
<ul>
<li>OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_OASIS-30_v2.nii.gz</li>
<li>OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_MNI152_v2.nii.gz</li>
<li>OASIS-TRT-20_jointfusion_DKT31_CMA_label_probabilities_in_MNI152_2mm_v2.nii.gz</li>
</ul>

<b>Cortical surface atlases</b> (FreeSurfer classifier .gcs file)
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<li>freesurfer_atlas_DKT31labels101subjects.tar.gz: from all 101 participants (2016)</li>
<li>DKTatlas40.tar.gz: from 40 participants (2012)</li>
</ul>