merged_gene_tpms_longestT.csv.zip

Data from 750 individuals published as part of the manuscript "Population level gene expression can repeatedly link genes to functions in maize"<br>Duplicated genotypes are marked with *_R2.<br><br>You can use the code below to extract them.<br><br>library(data.table)data &lt;- fread("merged_gene_tpms_longest.csv", data.table = F)head(data[1:5,1:5])genotypes &lt;- colnames(data[-1]) # we remove the first column "GeneID"duplicated.genotypes &lt;- genotypes[grep("_R2", genotypes)] # duplicated genotypes are ending with *_R2duplicated.genotypes1 &lt;- data[,c("GeneID", sub("_R2", "", duplicated.genotypes))]duplicated.genotypes2 &lt;- data[,c("GeneID", duplicated.genotypes)]<br>head(duplicated.genotypes1[,1:5])head(duplicated.genotypes2[,1:5])<br>