GWAS_Inclination_p279_PechRouge_2024.Rmd
收藏DataCite Commons2026-04-14 更新2026-05-04 收录
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资源简介：
R Markdown sript of the GWAS analysis for leaf inclination. Three types of GWAS were performed:
- An SNP-by-SNP model implemented in R/MM4LMM version 2.1.0 (Laporte et al., 2022) based on a linear mixed model was used to test the significance of the effect of each SNP,
- A multi-locus mixed model MLMM (Segura et al., 2012), which jointly analyses all SNPs to handle LD while selecting a subset of SNPs with a stepwise regression procedure,)
- A SNP selection in a Bayesian setting (Flutre et al., 2022) fitted with the variational algorithm implemented in R/varbvs version 2.5.7 (Carbonetto & Stephens, 2012).
提供机构：
Recherche Data Gouv
创建时间：
2026-04-14
