Allele coverage counts for all L. pustulata SNPs
收藏DataONE2017-03-03 更新2024-06-26 收录
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资源简介：
We provide here the Sync file of allele coverage counts for 37,225,382 called SNPs from six populations of Lasallia pustulata along an elevation gradient (for format specification see Kofler et al., PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 2011;27:3435-3436).
Used populations and abbreviations:
1 => Population 1, 176 m a.s.l.
2 => Population 2, 297 m a.s.l.
3 => Population 3, 588 m a.s.l.
4 => Population 4, 842 m a.s.l.
5 => Population 5, 1,125 m a.s.l.
6 => Population 6, 1,303 m a.s.l.
Output of the Sync file:
col1: scaffold number
col2: SNP position on scaffold
col3: reference character
col4: allele frequencies of population number 1
col5: allele frequencies of population number 2
coln: allele frequencies of population number n
The allele frequencies are in the format A:T:C:G:N:del, i.e: count of bases 'A', count of bases 'T', etc., and deletion count in the end.
创建时间：
2017-03-03
