Visium HD Human Colorectal Cancer (FFPE) data release pathologist annotation
收藏NIAID Data Ecosystem2026-05-02 收录
下载链接：
https://zenodo.org/record/11077885
下载链接
链接失效反馈官方服务：
资源简介：
10X Genomics released a spatial transcriptomic dataset of human colorectal cancer collected on the Visium HD platform.
The dataset was divided into different spatial domains based on the accompanying HE stain and the expression of characteristic marker genes.
The pathologist's annotation was added with the help of Napari and the Spatialdata python package.
Every .csv file contains the Visium HD bin barcode and annotation for the respective level of binning.
In addition the HE image was segmented and bins were assigned to Nuclei for a pseudo single cell resolution, as described here.
This work was carried out for the SpaceHack2023 project and the data shared here is licensed CC0.
创建时间：
2024-05-31
