Dataset for the paper submitted for peer-review with the title "Quantifying heterotrophic bacteria parameters and dissolved organic carbon biodegradability through oxygen data assimilation in a river water quality model"

The proposed dataset is related to the following article submitted for peer review:

Hasanyar, M., Flipo, N., Romary, T., Wang, S. (2023), Quantifying heterotrophic bacteria parameters and dissolved organic carbon biodegradability through oxygen data assimilation in a river water quality model, UNDER PEER-REVIEW

It consists of command files for the prose-pa0.74 software available here: https://gitlab.com/prose-pa/prose-pa 

To run the model :

1. Compile prose-pa0.74

2. Copy the executable in the current directory

3. In a terminal launch

> ./prose-pa0.74 simulation.COMM test.log

The “simulation.COMM” holds the settings for the ProSe-PA simulation related to the paper mentioned in the front head of the current file. 

The information on different parameters of “simulation.COMM” are included in “bathymetrie”, “Cmds”, “Inflows”, “layers”, “meteo”, “o2_obs”, “param_bio”, “Reaches” and “Singularities” folders.

The “bathymetrie” folder holds the geometric information of several cross-sections along the river. 

The Cmds folder holds the “simulation.COMM” file. 

The “Inflows” folder the information about the boundary condition inflows to the river such as discharge, concentration of organic carbon, etc.

The layer folder holds data of the initial conditions of the model (Table 2 in the article).

The “meteo” folder holds the meteorological information.

The “o2_obs” folder holds the observed oxygen data needed to do data assimilation. 

The “param_bio” folder holds information on the physiology of bacteria, phytoplankton, and other model species.

The “Reaches” folder holds information about river reaches and their manning coefficient. 

The “param_range” file holds the variation range of model parameters considered in data assimilation together with their perturbation percentage.

The output files are written in $HOME/Outputs folder. It is possible to change it directly in simulation.COMM, last entry “Output_folder”.