five

Bacillus Unannotated Protvec Model

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Figshare2022-05-16 更新2026-04-28 收录
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https://figshare.com/articles/dataset/Bacillus_Unknown_Protvec_Model/19770742
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Protvec model trained using 425,000 sequences from the Genome Taxonomy Database (GTDB). Sequences were dereplicated at 70% using CDHIT and filtered to remove sequences containing 'X', sequences shorter than 30 amino acids and sequences longer than 1024 amino acids. Training used a vector size of 100 and a context size of 25 to produce a dictionary object containing a 100-dimensional vector for each 3-mer present in the training data. Model is stored as a .pkl file which can be imported using the Python pickle module.
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2022-05-16
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