Gadus morhua (Atlantic cod May 2010 GadMor_May2010)

High scoring set 1169 tRNAs decoding standard 20 AA 1168 Selenocysteine tRNAs (TCA) 1 Notable atypical predictions Anticodon/isotype mismatch 31 Unexpected anticodons 6 Non-canonical anticodon loop length 7 Other tRNA-like predictions Primary filter (tRNAscan-SE pseudogenes) 689 Secondary filter (low feature scores, possible rep. element) 572 Tertiary filter (excessive isotype copies, possible rep. element) 54 Arg TCT 18 Leu CAA 11 Ile TAT 19 Tyr GTA 42 Isotype tRNA Count by Anticodon Total Ala AGC 19 GGC CGC 21 TGC 22 62 Gly ACC GCC 25 CCC 13 TCC 39 77 Pro AGG 48 GGG CGG 21 TGG 16 85 Thr AGT 25 GGT CGT 23 TGT 23 71 Val AAC 20 GAC CAC 25 TAC 7 52 Isotype tRNA Count by Anticodon Total Ser AGA 30 GGA CGA 14 TGA 15 ACT GCT 40 99 Arg ACG 21 GCG CCG 9 TCG 13 CCT 15 TCT 20 78 Leu AAG 25 GAG CAG 38 TAG 17 CAA 11 TAA 12 103 Isotype tRNA Count by Anticodon Total Phe AAA GAA 29 29 Asn ATT GTT 31 31 Lys CTT 32 TTT 41 73 Asp ATC GTC 25 25 Glu CTC 40 TTC 35 75 His ATG GTG 19 19 Gln CTG 39 TTG 10 49 Isotype tRNA Count by Anticodon Total Ile AAT 19 GAT CAT TAT 19 38 iMet/Met CAT 94/14 108 Tyr ATA GTA 42 42 Supres TCA CTA TTA 0 Cys ACA GCA 24 24 Trp CCA 28 28 SelCys TCA 1 1