Plumbom et al. 2026

Processed data for Plumbom et al. "circVDJ-seq for T cell clonotype detection in single-cell and spatial multi-omics" - annotation: contains meta-data for different single-cell datasets - cellranger_count: contains count matrices (h5 objects) and fragment files for ATAC - cellranger_vdj: contains `cellranger vdj` output (metrics_summary.csv and filtered_contig_annotations.csv) - dandelion: contains results of re-processing of cellranger vdj output with dandelion - mixcr: contains circVDJ-seq and spatialVDJ processing results using MiXCR - objects: contains processed Seurat objects for lymph node Visium data - spaceranger: contains spaceranger output for neuroblastoma and lung/lymph node visium runs - trust: contains circVDJ-seq and MAS-ISO-seq processing results using TRUST4