Alignments from: Gene lack of expression of embryogenesis related factors correlates with structural reduction in the holoendoparasitic Angiosperm Pilostyles boyacensis (Apodanthaceae)

These files are the alignments used in the work "Gene loss expression in the early embryogenesis network correlates with structural reduction in the holoendoparasitic angiosperm Pilostyles boyacensis (Apodanthaceae)". Nucleotide alignments for the AGO, AP2-ERF, HD-ZIP-III and IV, PIN, RLK-CR4, RLK-RPK2, and WOX gene families. Coding sequences were download from the following databases: TAIR database (Poole, 2007), Phytozome v13) (Goodstein et al., 2012), Cucurbit Genomics Database (Zheng et al., 2019), OneKP database (Carpenter et al., 2019). Also, new data generated for P. boyacensis and deposited in Genbank with the codes OR296323-OR296355. The codes of sequences are in Appendix 1 of "Gene loss expression in the early embryogenesis network correlates with structural reduction in the holoendoparasitic angiosperm Pilostyles boyacensis (Apodanthaceae). The symbol # indicates a numeric or alphanumeric code associated with the gene according to the nomenclature of each base. Alignments were performed using the RevTrans platform (Wernersson and Pedersen, 2003), which translates the sequences into amino acids, aligns them using MAFFT with its automatic parameters, and then generates the corresponding matrix in nucleotides.