The Excel workbook contains 5 different tabs.

Tab 1, Fig 3 Data: consists of the node age estimates for all 20 independent PhyloBayes dating analyses as well as the run used to determine the prior for each node; each estimate is plotted separately in Fig 3. Tab 2, Fig 3 Data for R: the same data as in tab 1, but formatted for analysis with the accompanying R script “plot_DATING.R” available via Data Dryad: https://doi.org/10.5061/dryad.rfj6q577d [22]. Tab 3, S3_Fig_Data: the data used to generate S3 Fig. The average node ages estimated in tab 1 are used here to plot age vs. concordance factors estimated for each node in IQ-TREE. Tab 4, S4_Fig_PanelA_Data: contains the tree counts that resulted from the SLiM3 simulation conditions pictured in S4A Fig. Tab 5, S4_Fig_PanelB_Data: contains the tree counts for the SLiM3 simulation conditions pictured in S4B Fig. SLiM3 recipes for both simulations are available via Data Dryad at https://doi.org/10.5061/dryad.rfj6q577d [22]. (XLSX)