Additional file 2 of Longitudinal study on the effects of growth-promoting and therapeutic antibiotics on the dynamics of chicken cloacal and litter microbiomes and resistomes

Additional file 2: Table S1. Overview of metagenomic sequencing data. Table S2. Metagenome Assembled Genomes (MAGs) recovered from cloacal swab and litter samples. Table S3. Representative high quality MAGs recovered from cloacal swab (n = 26) and litter (n = 12) samples. Table S4. Representative MAGs associated with pathogen-harboring families from cloacal swab (n = 17) and litter (n = 7) samples. Table S5. Presence (1) of ARG subtypes in cloacal swab and litter samples. Table S6. Presence (1) of specific ARG subtypes in MAGs from pathogen-harboring families (17 Cloacal swab and 7 litter MAGs). Table S7. List of ARGs and MGEs targeted in High throughput qPCR array analysis.