Tomographic polarimetric Dataset of a Trabecular bone, used in the paper "Reconstructing three-dimensional optical anisotropy with tomographic Müller-polarimetric microscopy"

Tomographic polarimetric Dataset of a Trabecular bone, used in the paper "Reconstructing three-dimensional optical anisotropy with tomographic Müller-polarimetric microscopy".

In the compressed folder, there is :

The raw data recorded by the camera during the tomographic polarimetric measurements (yellow_bone_ID_001_202418_1156.h5),

The raw data were the shifts inside each projection, that occurs sometime between polarisation states, has been corrected manually (yellow_bone_ID_001_202418_1156_pre_processing_v2.h5)

The binned, cropped and aligned data (yellow_bone_ID_001_20231218_1039_alignment_v2_2.mat)

The 3D reconstruction of the index elipsoid at each voxel of the synthetic object (bir TT result 1.48200 & 1.4835 - scale[4, 0.000001] - coef [0.01,500] - reg weights 0.375&0.0025 - itr250.mat)

The synthetic projections linked to this synthetic object (projections + reg weights 0.375&0.0025 + coef_tv [1.e-02 5.e+02] + itr250.mat)

The reconstruction code will be published as part of our open-source software package MUMOTT including tutorials on our webpage (mumott.org), the data will be published over zenodo with the publication of the research paper. At the point of submission the code is available upon requestSee linked publication for the full description of the dataset.