Additional file 1 of Genome-wide methylation and transcriptome of blood neutrophils reveal the roles of DNA methylation in affecting transcription of protein-coding genes and miRNAs in E. coli-infected mastitis cows

Additional file 1: Table S1. Summary of the differentially methylated genes in the two libraries. A total of 494 DMRs including 61 up-methylated genes and 433 down-methylated genes were identified in the healthy and mastitic groups. Table S2. Summary of the differentially methylated genes harboring in the QTLs associated with clinical mastitis, somatic cell count and somatic. Table S3. Summary of the differentially methylated miRNAs in the two libraries. A total of 26 differentially methylated miRNAs including 8 up-methylated miRNAs and 18 down-methylated miRNAs were identified in the healthy and mastitic groups. Table S4. Summary of the differentially expressed genes in the two groups. A total of 1339 DEGs including 1094 up-regulated genes and 245 down-regulated genes were identified in the healthy and mastitic groups. Table S5. Summary of differentially methylated and expressed genes in the RRBS and RNA-seq sequencing. Table S6. The primers used for BSP and qPCR.