Details of 2840 flying-foxes captured and sampled in the eastern Australian states of Queensland (QLD) and New South Wales (NSW) between February 2012 and June 2014.

1BFF = Black flying-fox (Pteropus alecto); GHFF = Grey-headed flying-fox (P. poliocephalus); LRFF = Little red flying-fox (P. scapulatus).2 Roosts shared with a structured longitudinal study investigating HeV infection and transmission dynamics in flying-foxes (reported elsewhere); site selection changed after first bi-monthly sampling event from Toowoomba to Boonah.3 Roosts shared with a cross-sectional study series investigating the association between flying-fox roost disturbance and HeV infection dynamics [25].Details of 2840 flying-foxes captured and sampled in the eastern Australian states of Queensland (QLD) and New South Wales (NSW) between February 2012 and June 2014.