Lagisz_DATATABLE

General description : the table contains genetic and phenotypic data for 47 Nematoda species and 2 outgroup species.

Table columns:
ord - numerical ordering of the table in order of data collection.
animal - specie's full latin name.
Refseq - specie's Refseq code.
NCBItaxID - specie's taxonomic ID from NCBI.
genus - specie's genus name.
species - species name.
host - main definitive host or habitat.
host_code - main definitive host code: 0 = free-living or plant-parasitic, 1 = parasite of endotherms, -1 = parasite of ectotherms.
class - specie's taxonomic class.
reproduction - specie's reprodactive mode: dioecy, hermaphroditism, androdioecy.
max_male_length - maximum length of males [mm].
av_male_width - average male width [mm].
av_female_length - average female length [mm].
max_female_width - maximum female width [mm].
size_sources - literature sources for body size measurements.
volume_male - calculated male body volume [mm3].
volume_female - calculated female body volume [mm3].
log_volume_male- logarithm of male body volume.
log_volume_female- logarithm of female body volume.
genome_length - species mitogenome sequence length [bp].
p_GC_content - percent of GC base content of the mitogenomic sequence.
p_prot_coding - percent of protein-coding bases in the mitogenomic sequence.
p_coding - percent coding bases in the mitogenomic sequence.
N_cDNAs - number of protein-coding genes in the mitogenome.
N_tRNAs - number of tRNA-coding genes in the mitogenome.
N_rRNAs - number of rRNA-coding genes in the mitogenome.
bp_cDNAs - length of protein-coding sequence in the mitogenome [bp].
bp_tRNAs - length of tRNA-coding sequence in the mitogenome [bp].
bp_rRNAs - length of rRNA-coding sequence in the mitogenome [bp].
bp_noncoding - length of non-coding sequence in the mitogenome [bp].
N_repeats - number of repeats in the mitogenome.
bp_repeats - length of repeat sequence in the mitogenome [bp].
p_repeats - percent of repeat sequence in the mitogenome.
go_dist_anc - rearrangement distance from the estimated most recent ancestror of Nematoda, estimated with MGR software.
subs_rate - species amino-acid substitution rate in the mitogenome, estimated with BEAST.