data_phenotype.tab

Leaf damage measured as consumed area during the contact time (see details in the article).

- leafID: internal ID of the accession.
- area: consumed area in mm2.
- area.e: average area of one hole.
- area.v: variance of the area.
- area.n: number of holes.
- examID: ID of the observer.
- trialID: ID of the block.
- date: date of the measure.
- .id: name of the .jpg file.
- repID: ID of the replicate within the block if any.
- ID: ID of the accession.
- sp: species.
- ssp: subspecies.
- countryID: ID of the country of origin.
- seedLots: ID of the seed lot.
- type: type of the accession (landrace or wild). - control: boolean to indicate if it is a control accession.
- unexpl_deadcsfb: boolean to indicate if the image is unexploitable because one of the two beetles died during the experiment.
- unexpl_small: boolean to indicate if the image is unexploitable because the leaf was unexpectedly small.
- unexpl_diffexam: boolean to indicate if the image is unexploitable because the observer did not coverge towards a close measurement value.
- unexpl_doubt: boolean to indicate if the image is unexploitable because the measurement is doubtful.
- unexpl_hd01: boolean to indicate if the image is unexploitable because the image is from the block 1 (delay of sowing).
- is.exploitable: summary boolean to indicate if the image is exploitable.
- pop: boolean to indicate whether it is a pool-seq.
- IDgen: alternative ID (used in the VCF file).
- usable: final summary boolean to indicate if the image is exploitable and with some damage.
- V1: PC1 of the genetic PCoA.
- V2: PC2 of the genetic PCoA.
- V3: PC3 of the genetic PCoA.
- V4: PC4 of the genetic PCoA.
- V5: PC5 of the genetic PCoA.
- o.cot: boolean to indicate if it is an outlier according to car::outlierTest().
- o.res: boolean to indicate if it is an outlier according to the leverage.
- o.coo: boolean to indicate if it is an outlier according to Cook's distance.